1. Xiaoquan Su, Jian Xu, Kang Ning*. Parallel-META: efficient metagenomic data analysis based on high-performance computation. BMC Systems Biology, 2012, 6(Suppl 1):S16. PubMed

2. Xiaoquan Su, Jian Xu, Kang Ning*. Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data. Bioinformatics, 2012, 28(19):2493-2501. PubMed

3. Baoxing Song, Xiaoquan Su, Jian Xu, Kang Ning*. MetaSee: an interactive and extendable visualization toolbox for metagenomic sample analysis and comparison. PLoS One, 2012, 7(11):e48998. PubMed

4. Fang Yang, Xiaowei Zeng, Kang Ning, Kuan-Liang Liu, Chien-Chi Lo, Wei Wang, Jie Chen, Dongmei Wang, Ranran Huang, Xingzhi Chang, Patrick S Chain, Gary Xie, Junqi Ling*, Jian Xu*. Saliva microbiomes distinguish caries-active from healthy human populations. The ISME Journal, 2012, 6(1):1-10. PubMed 【第二单位】

5. Xiao-Hong Jian, Hai-Xue Pan, Ting-Ting Ning, Yuan-Yuan Shi, Yong-Sheng Chen, Yan Li, Xiao-Wei Zeng, Jian Xu, Gong-Li Tang*. Analysis of YM-216391 biosynthetic gene cluster and improvement of the cyclopeptide production in a heterologous host. ACS Chemical Biology, 2012, 7(4):646-651. PubMed 【第二单位】

6. Mengqiu Li, Jian Xu, Maria Romero-Gonzalez, Steve A Banwart, Wei E Huang*. Single cell Raman spectroscopy for cell sorting and imaging. Current Opinion in Biotechnology, 2012, 23(1):56-63. PubMed 【第二单位】

7. Kang Ning, Damian Fermin, Alexey I. Nesvizhskii*. Comparative analysis of different label-free mass spectrometry based protein abundance estimates and their correlation with RNA-Seq gene expression data. Journal of Proteome Research, 2012, 11(4):2261-2271. PubMed 【第二单位】

8. Na You#, Gabriel Murillo#, Xiaoquan Su, Xiaowei Zeng, Jian Xu, Kang Ning, Shoudong Zhang, Jiankang Zhu, Xinping Cui*. SNP calling using genotype model selection on high-throughput sequencing data. Bioinformatics, 2012, 28(5):643-650. PubMed 【第三单位】

9. Wei Fang, Xingzhi Chang, Xiaoquan Su, Jian Xu, Deli Zhang, Kang Ning. A machine learning framework of functional biomarker discovery for different microbial communities based on metagenomic data. 2012 IEEE 6th International Conference on Systems Biology (ISB), 2012, 106-112. Link 【第二单位】

10. Bao-Zhan Wang, Cai-Xia Zhang, Ji-Liang Liu, Xiao-Wei Zeng, Feng-Rui Li, Yu-Cheng Wu, Xian-Gui Lin, Zheng-Qin Xiong, Jian Xu, Zhong-Jun Ji*. Microbial community changes along a land-use gradient of desert soil origin. Pedosphere, 2012, 22(5):593-603. Link 【第四单位】

Book Chapters

1. Dongmei Wang#, Yandu Lu#, He Huang, Jian Xu* (2011). Establishing oleaginous microalgae research models for consolidated bioprocessing of solar energy. In: Bai, FW., Liu, CG., Huang, H., Tsao, G. (eds) Biotechnology in China III: Biofuels and Bioenergy. Advances in Biochemical Engineering Biotechnology, vol 128. Springer, Berlin, Heidelberg. 128:69-84. PubMed