Dongmei Wang#, Kang Ning#, Jing Li#, Jianqiang Hu, Danxiang Han, Hui Wang, Xiaowei Zeng, Xiaoyan Jing, Qian Zhou, Xiaoquan Su, Xingzhi Chang, Anhui Wang, Wei Wang, Jing Jia, Li Wei, Yi Xin, Yinghe Qiao, Ranran Huang, Jie Chen, Bo Han, Kangsup Yoon, Russell T. Hill, Yonathan Zohar, Feng Chen, Qiang Hu, Jian Xu*. Nannochloropsis genomes reveal evolution of microalgal oleaginous traits. PLoS Genetics, 2014, 10(1):e1004094. PubMed

Qian Zhou, Xiaoquan Su, Gongchao Jing, Kang Ning*. Meta-QC-Chain: comprehensive and fast quality control method for metagenomic data. Genomics, Proteomics & Bioinformatics, 2014, 12(1):52-56. PubMed

Xiaoquan Su#, Weihua Pan#, Baoxing Song, Jian Xu, Kang Ning*. Parallel-META 2.0: enhanced metagenomic data analysis with functional annotation, high performance computing and advanced visualization. PLoS One, 2014, 9(3):e89323. PubMed

Xiaoquan Su#, Xuetao Wang#, Gongchao Jing, Kang Ning*. GPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU. Bioinformatics, 2014, 30(7):1031-1033. PubMed

Jing Li#, Danxiang Han#, Dongmei Wang#, Kang Ning#, Jing Jia, Li Wei, Xiaoyan Jing, Shi Huang, Jie Chen, Yantao Li, Qiang Hu, Jian Xu*. Choreography of transcriptomes and lipidomes of Nannochloropsis reveals the mechanisms of oil synthesis in microalgae. The Plant Cell, 2014, 26(4):1645-1665. PubMed

Tingting Wang#, Yuetong Ji#, Yun Wang, Jing Jia, Jing Li, Shi Huang, Danxiang Han, Qiang Hu, Wei E Huang*, Jian Xu*. Quantitative dynamics of triacylglycerol accumulation in microalgae populations at single-cell resolution revealed by Raman microspectroscopy. Biotechnology for Biofuels and Bioproducts, 2014, 7:58. PubMed

Yandu Lu#, Wenxu Zhou#, Li Wei, Jing Li, Jing Jia, Fei Li, Steven M Smith*, Jian Xu*. Regulation of the cholesterol biosynthetic pathway and its integration with fatty acid biosynthesis in the oleaginous microalga Nannochloropsis oceanica. Biotechnology for Biofuels and Bioproducts, 2014, 7:81. PubMed

Lihui Ren, Xiaoquan Su, Yun Wang, Jian Xu, Kang Ning*. QSpec: online control and data analysis system for single-cell Raman spectroscopy. PeerJ, 2014, 2:e436. PubMed

Jianqiang Hu, Dongmei Wang, Jing Li, Gongchao Jing, Kang Ning*, Jian Xu*. Genome-wide identification of transcription factors and transcription-factor binding sites in oleaginous microalgae Nannochloropsis. Scientific Reports, 2014, 4:5454. PubMed

Shi Huang#, Rui Li#, Xiaowei Zeng, Tao He, Helen Zhao, Alice Chang, Cunpei Bo, Jie Chen, Fang Yang, Rob Knight, Jiquan Liu, Catherine Davis, Jian Xu*. Predictive modeling of gingivitis severity and susceptibility via oral microbiota. The ISME Journal, 2014, 8(9):1768-1780. PubMed

Xiaoquan Su, Jianqiang Hu, Shi Huang, Kang Ning*. Rapid comparison and correlation analysis among massive number of microbial community samples based on MDV data model. Scientific Reports, 2014, 4:6393. PubMed

Yandu Lu, Danuše Tarkowská, Veronika Turečková, Tingwei Luo, Yi Xin, Jing Li, Qintao Wang, Nianzhi Jiao, Miroslav Strnad, Jian Xu*. Antagonistic roles of abscisic acid and cytokinin during response to nitrogen depletion in oleaginous microalga Nannochloropsis oceanica expand the evolutionary breadth of phytohormone function. The Plant Journal, 2014, 80(1):52-68. PubMed

Qian Zhou#, Z. Lewis Liu#, Kang Ning#, Anhui Wang, Xiaowei Zeng, Jian Xu*. Genomic and transcriptome analyses reveal that MAPK- and phosphatidylinositol-signaling pathways mediate tolerance to 5-hydroxymethyl-2-furaldehyde for industrial yeast Saccharomyces cerevisiae. Scientific Reports, 2014, 4:6556. PubMed

Qian Zhou#, Xiaoquan Su#, Kang Ning*. Assessment of quality control approaches for metagenomic data analysis. Scientific Reports, 2014, 4:6957. PubMed

Yuetong Ji, Yuehui He, Yanbin Cui, Tingting Wang, Yun Wang, Yuanguang Li, Wei E. Huang, Jian Xu*. Raman spectroscopy provides a rapid, non-invasive method for quantitation of starch in live, unicellular microalgae. Biotechnology Journal, 2014, 9(12):1512-1518. PubMed

Qiang Zhang#, Peiran Zhang#, Yetian Su, Chunbo Mou, Teng Zhou, Menglong Yang*, Jian Xu*, Bo Ma*. On-demand control of microfluidic flow via capillary-tuned solenoid microvalve suction. Lab on a Chip, 2014, 14(24):4599-4603. PubMed

苏晓泉, 宋宝兴, 王雪涛, 马新乐, 徐健, 宁康*. Meta-Mesh—元基因组数据分析系统. 生物工程学报, 2014, 30(1):6-17. Link

Fang Yang#, Kang Ning#, Xingzhi Chang, Xiao Yuan, Qichao Tu, Tong Yuan, Ye Deng, Christopher L Hemme, Joy Van Nostrand, Xinping Cui, Zhili He, Zhenggang Chen, Dawei Guo, Jiangbo Yu, Yue Zhang, Jizhong Zhou*, Jian Xu*. Saliva microbiota carry caries-specific functional gene signatures. PLoS One, 2014, 9(2):e76458. PubMed 【第二单位】

Xinwei Cheng, Xiaohua Chen, Xiaoquan Su, Huanxin Zhao, Maozhen Han, Cunpei Bo, Jian Xu, Hong Bai*, Kang Ning*. DNA extraction protocol for biological ingredient analysis of Liuwei Dihuang Wan. Genomics, Proteomics & Bioinformatics, 2014, 12(3):137-143. PubMed 【第二单位】

Xinwei Cheng#, Xiaoquan Su#, Xiaohua Chen, Huanxin Zhao, Cunpei Bo, Jian Xu, Hong Bai*, Kang Ning*. Biological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan. Scientific Reports, 2014, 4:5147. PubMed 【第二单位】

Peng Yang, Xiaoquan Su, Le Ou-Yang, Hon-Nian Chua, Xiao-Li Li, Kang Ning*. Microbial community pattern detection in human body habitats via ensemble clustering framework. BMC System Biology, 2014, 8(Suppl 4):S7. PubMed 【第二单位】