Gongchao Jing, Yufeng Zhang, Wenzhi Cui, Lu Liu, Jian Xu, Xiaoquan Su*. Meta-Apo improves accuracy of 16S-amplicon-based prediction of microbiome function. BMC Genomics, 2021, 22(1):9. PubMed

Hekmatara Maryam*, Mohammadhadi Heidari Baladehi, Yuetong Ji, Jian Xu*, D₂O-probed Raman microspectroscopy distinguishes the metabolic dynamics of macromolecules in organellar anticancer drug response. Analytical Chemistry, 2021, 93(4): 2125-2134. PubMed

Shi Huang*,Tao He, Feng Yue, Xiujun Xu, Lijiang Wang, Pengfei Zhu, Fei Teng, Zheng Sun, Xiaohui Liu, Gongchao Jing, Xiaoquan Su, Lijian Jin, Jiquan Liu, Jian Xu*, Longitudinal multi-omics and microbiome meta-analysis identify an asymptomatic gingival state that links gingivitis, periodontitis, and aging. mBio, 2021, 12(2):e03281-20. PubMed

Qintao Wang, Yanhai Gong, Yuehui He, Yi Xin, Nana Lv, Xuefeng Du, Yun Li, Byeong-ryool Jeong, Jian Xu*. Genome engineering of Nannochloropsis with hundred-kilobase fragment deletions by Cas9 cleavages. The Plant Journal, 2021, 106(4):1148-1162. PubMed

Qintao Wang#, Yanbin Feng#, Yandu Lu, Yi Xin, Chen Shen, Li Wei, Yuxue Liu, Nana Lv, Xuefeng Du, Wenqiang Zhu, Byeong-ryool Jeong, Song Xue*, Jian Xu*. Manipulating fatty-acid profile at unit chain-length resolution in the model industrial oleaginous microalgae Nannochloropsis. Metabolic Engineering, 2021, 66:157-166. PubMed

Sree Sankar Darveekaran Nair, Pengfei Zhu, Yogendra Bhaskar, Fei Teng*. Influence of DNA extraction methods and 16S rRNA targeted hypervariable regions on microbial diversity profiling of dental plaque and saliva. ScienceAsia, 2021, 47:567-577. Link

Xiaoyan Jing#, Yanhai Gong#, Teng Xu#, Yu Meng, Xiao Han, Xiaolu Su, Jianmei Wang, Yuetong Ji, Yuandong Li, Zhongjun Jia, Bo Ma*, Jian Xu*. One-cell metabolic phenotyping and sequencing of soil microbiome by Raman-Activated Gravity-Driven Encapsulation (RAGE). mSystems, 2021, 6(3):e00181-21. PubMed

Bhaskar Yogendra*, Su Xiaoquan, Xu Chenggang, Xu Jian*. Predicting selective RNA processing and stabilization operons in Clostridium spp. Frontiers in Microbiology, 2021, 12:673349. PubMed

Mohammadhadi Heidari Baladehi, Maryam Hekmatara, Yuehui He, Yogendra Bhaskar, Zengbin Wang, Lu Liu, Yuetong Ji, Jian Xu*, Culture-free identification and metabolic profiling of microalgal single-cells via ensemble learning of ramanomes.  Analytical Chemistry, 2021, 93(25):8872–8880. PubMed

Chunyu Li*, Yanhai Gong, Xixian Wang, Jian Xu, Bo Ma*. Integrated addressable dynamic droplet array (aDDA) as sub-nanoliter reactors for high-coverage genome sequencing of single yeast cells. Small, 2021, 17(37):e2100325. PubMed

Gongchao Jing#, Yufeng Zhang#, Lu Liu, Zengbin Wang, Zheng Sun, Rob Knight, Xiaoquan Su*, Jian Xu*. A scale-free, fully connected global transition network underlies known microbiome diversity. mSystems, 2021, 6(4):e00394-21. PubMed

Yuehui He, Shi Huang, Peng Zhang, Yuetong Ji, Jian Xu*. Intra-Ramanome Correlation Analysis unveils metabolite conversion network from an isogenic population of cells. mBio, 2021, 12(4):e01470-21. PubMed

Teng Xu, XiaoHan, Pengfei Zhu, Jing Dai, Min Liu, Yang Liu, Jian Xu, Bo Ma*, A milliliter to picoliter-level centrifugal microfluidic concentrator for fast pathogen detection and antimicrobial susceptibility testing. Sensors and Actuators B: Chemical, 2021, 343(15):130117. Link

Wenjun Liu#, Zheng Sun#, Chen Ma#, Jiachao Zhang, ChenChen Ma, Yinqi Zhao, Hong Wei*, Shi Huang*, Heping Zhang. Exposure to soil environments during earlier life stages is distinguishable in the gut microbiome of adult mice. Gut Microbes, 2021, 13(1):1830699. PubMed 【第二单位】

Gongchao Jing#, Lu Liu#, Zengbin Wang, Yufeng Zhang, Qian Li, Chunxiao Gao, Meng Zhang, Min Li, Zhenkun Zhang, Xiaohan Liu, Jian Xu*, Xiaoquan Su*. Microbiome Search Engine 2: a platform for taxonomic and functional search of global microbiomes on the whole-microbiome level. mSystems, 2021, 6(1):e00943-20. PubMed 【第二单位】

Anle Ge#, Liang Hu#, JiaXing Fan, Minghai Ge, Xixian Wang, Shanshan Wang, Xiaojun Feng, Wei Du*, Bi-Feng Liu*. A low-cost microfluidic platform coupled with light emitting diode for optogenetic analysis of neuronal response in C. elegans. Talanta, 2021, 223(Pt 1): 121646. PubMed 【第二单位】

Guangyu E. Chen, Andrew Hitchcock, Jan Mareš, Yanhai Gong, Martin Tichý, Jan Pilný, Lucie Kovářová, Barbora Zdvihalová, Jian Xu, C. Neil Hunter, Roman Sobotka*. Evolution of Ycf54-independent chlorophyll biosynthesis in cyanobacteria. Proceedings of the National Academy of Sciences, 2021, 118(10):e2024633118. PubMed 【第五单位】

Haowei Ni, Xiaoyan Jing, Xian Xiao, Na Zhang, Xiaoyue Wang, Yueyu Sui, Bo Sun, Yuting Liang*. Microbial metabolism and necromass mediated fertilization effect on soil organic carbon after long-term community incubation in different climates. The ISME Journal, 2021, 15(9):2561-2573. PubMed 【第三单位】

Yufeng Zhang, Gongchao Jing, Yuzhu Chen, Jinhua Li*, Xiaoquan Su*, Hierarchical Meta-Storms enables comprehensive and rapid comparison of microbiome functional profiles on a large scale using hierarchical dissimilarity metrics and parallel computing. Bioinformatics Advances, 2021, 1(1):vbab003. Link 【第三单位】

Ying Zhang#, Shi Huang#, Songbo Jia#, Zheng Sun, Shanshan Li, Fan Li, Lijuan Zhang, Jie Lu, Kaixuan Tan, Fei Teng*, Fang Yang*. The predictive power of saliva electrolytes exceeds that of saliva microbiomes in diagnosing early childhood caries. Journal of Oral Microbiology, 2021, 13(1):1921486. PubMed 【第二单位】

Shanshan Li#, Shi Huang#, Yi Guo, Ying Zhang, Lijuan Zhang, Fan Li, Kaixuan Tan, Jie Lu, Zhenggang Chen, Qingyuan Guo, Yongping Tang, Fei Teng*, Fang Yang*. Geographic variation did not affect the predictive power of salivary microbiota for caries in children with mixed dentition. Frontiers in cellular and infection microbiology, 2021, 11:680288. PubMed 【第六单位】

Xiaoting Hua#*, Jintao He#, Jingfen Wang, Linghong Zhang, Linyue Zhang, Qingye Xu, Keren Shi, Sebastian Leptihn, Yue Shi, Xiaoting Fu, Pengfei Zhu, Paul G Higgins, Yunsong Yu*. Novel tigecycline resistance mechanisms in Acinetobacter baumannii mediated by mutations in adeS, rpoB and rrf. Emerging microbes & infections, 2021, 10(1):1404-1417. PubMed【第六单位】

Xiaoquan Su, Elucidating the beta-diversity of the microbiome: from global alignment to local alignment. mSystems, 2021, 6(4):e00363-21. PubMed 【第二单位】