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Zheng Sun#, Xudong Liu#, Gongchao Jing, Yuzhu Chen, Shuaiming Jiang, Meng Zhang, Jiquan Liu, Jian Xu and Xiaoquan Su*. Comprehensive understanding to the public health risk of environmental microbes via a microbiome-based index. Journal of Genetics and Genomics 2022, S1673-8527(22)00002-9. PubMed

Zheng Sun#, Shi Huang*#, Pengfei Zhu, Lam Tzehau, Helen Zhao, Jia Lv, Rongchao Zhang, Lisha Zhou, Qianya Niu, Xiuping Wang, Meng Zhang, Gongchao Jing, Zhenmin Bao, Jiquan Liu, Shi Wang*, Jian Xu*. Species-resolved sequencing of low-biomass or degraded microbiomes using 2bRAD-M. Genome Biology 2022, 23(1):36. PubMed

Min Liu#, Pengfei Zhu#, Lei Zhang#, Yanhai Gong, Chen Wang, Lu Sun, Lili Wang, Rongze Chen, Yuli Mao, Xiaoting Fu, Lili Zhang, Teng Xu, Yuetong Ji, Quanjiang Dong, Bo Ma, Jianzhong Zhang*, Jian Xu*. Single-cell identification, drug susceptibility test, and whole-genome sequencing of Helicobacter pylori directly from gastric biopsy by Clinical Antimicrobial Susceptibility Test Ramanometry. Clinical Chemistry 2022. PubMed

Xiaoyan Jing#, Yanhai Gong#, Teng Xu#, Yu Meng, Xiao Han, Xiaolu Su, Jianmei Wang, Yuetong Ji, Yuandong Li, Zhongjun Jia, Bo Ma*, Jian Xu*. One-cell metabolic phenotyping and sequencing of soil microbiome by Raman-Activated Gravity-Driven Encapsulation (RAGE). mSystems 2021, 6(3):e0018121. PubMed

Shi Huang*, Tao He, Feng Yue, Xiujun Xu, Lijiang Wang, Pengfei Zhu, Fei Teng, Zheng Sun, Xiaohui Liu, Gongchao Jing, Xiaoquan Su, Lijian Jin, Jiquan Liu, Jian Xu*, Longitudinal multi-omics and microbiome meta-analysis identify an asymptomatic gingival state that links gingivitis, periodontitis and aging. mBio 2021, 12:e03281-20. PubMed

Tao He*, Shi Huang, Feng Yue, Lijiang Wang, Jiquan Liu, Jian Xu. A randomized, controlled comparison of a stannous-containing dentifrice for reducing gingival bleeding and balancing the oral microbiome relative to a positive control. American Journal of Dentistry 2021, 34(4):222-227. PubMed

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Xiaoquan Su*, Gongchao Jing, Zheng Sun, Lu Liu, Zhenjiang Xu, Daniel McDonald, Zengbin Wang, Honglei Wang, Antonio Gonzalez, Yufeng Zhang, Shi Huang, Gavin Huttley, Rob Knight*, Jian Xu*. Multiple-Disease detection and classification across cohorts via microbiome search. mSystems 2020, 5(2):e00150-20. PubMed

Zigang Xu, Xiaoyan Liu, Yueqing Niu, Chunping Shen, Kate Heminger, Laurie Moulton, Amy Yu, Tina Allen, Lesheng Zhang, Feng Yue, Jiquan Liu, Ying Xu, Helen Zhao, Lijuan Li, Tom Cambron, Jian Xu, Ed Smith, Karl Wei*. Skin benefits of moisturising body wash formulas for children with atopic dermatitis: A randomised controlled clinical study in China. Australasian Journal of Dermatology 2020, 61(1):e54-e59. PubMed

Zheng Sun#, Shi Huang#, Pengfei Zhu, Feng Yue, Helen Zhao, Ming Yang, Yueqing Niu, Gongchao Jing, Xiaoquan Su, Huiying Li, Chris Callewaert, Rob Knight, Jiquan Liu, Ed Smith, Karl Wei, Jian Xu*. A microbiome-based index for assessing skin health and treatment effects for atopic dermatitis in children. mSystems 2019, 4(4):e00293-19. PubMed

Yuehui He#, Xixian Wang#, Bo Ma*, Jian Xu*. Ramanome technology platform for label-free screening and sorting of microbial cell factories at single-cell resolution. Biotechnology Advances 2019, 37:107388. PubMed

Xiaoquan Su*, Gongchao Jing, Daniel McDonald, Honglei Wang, Zengbin Wang, Antonio Gonzalez, Zheng Sun, Shi Huang, Jose Navas, Rob Knight*, Jian Xu*. Identifying and predicting novelty in microbiome studies. mBio 2018, 9(6):e02099-18. PubMed

Jian Xu*, Bo Ma, Xiaoquan Su, Shi Huang, Xin Xu, Xuedong Zhou, Wei Huang, Rob Knight*. Emerging trends for microbiome analysis: from single-cell functional imaging to microbiome big data. Engineering 2017, 3(1):66-70. Link

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Shi Huang#, Zhen Li#, Tao He, Cunpei Bo, Jinlan Chang, Lin Li, Yanyan He, Jiquan Liu, Duane Charbonneau, Rui Li*, Jian Xu*. Microbiota-based signature of gingivitis treatments: A randomized study. Scientific Reports 2016, 6:24705. PubMed

Fei Teng#, Tao He#, Shi Huang, Cun-Pei Bo, Zhen Li, Jin-Lan Chang, Ji-Quan Liu, Duane Charbonneau, Jian Xu, Rui Li*, Jun-Qi Ling*. Cetylpyridinium chloride mouth rinses alleviate experimental gingivitis by inhibiting dental plaque maturation. International Journal of Oral Science 2016, 8(3):182-190. PubMed

Fei Teng#, Fang Yang#, Shi Huang#, Cunpei Bo, Zhengjiang Zech Xu, Amnon Amir, Rob Knight, Junqi Ling*, Xu Jian*. Prediction of early childhood caries via spatial-temporal variation of oral microbiota. Cell Host & Microbe 2015, 18(3):296-306. PubMed

Shi Huang#, Rui Li#, Xiaowei Zeng, Tao He, Helen Zhao, Alice Chang, Cunpei Bo, Jie Chen, Fang Yang, Rob Knight, Jiquan Liu, Catherine Davis, Jian Xu*. Predictive modeling of gingivitis severity and susceptibility via oral microbiota. The ISME Journal 2014, 8(9):1768-1780. PubMed

Shi Huang#, Fang Yang#, Xiaowei Zeng, Jie Chen, Rui Li*, Ting Wen, Chun Li, Wei Wei, Jiquan Liu, Lan Chen, Catherine Davis, Jian Xu*. Preliminary characterization of the oral microbiota of Chinese adults with and without gingivitis. BMC Oral Health 2011, 11:33. PubMed